% fMRI Sandbox
% Path ->  L:\projects\steffen\FSB
%
%   FSB            - FSB: Rapid preview fMRI toolbox
%   sandbox_config - FSB: fMRISandbox configuration file
%
%
%   dev\fsb_realign_dft3D               - FSB - DEV: Realign scans with discrete fourier transform algorithm volumewise
%   dev\fsb_show_design                 - MPI - DEV : Show hemodynamics design
%   dev\fsb_get_hemodynamics_er         - FSB : Event related design selection GUI
%   dev\fsb_realign_multiple            - FSB - SPM:  realign multiple subjects/sessions in y-direction first and
%   dev\fsb_recalc_onsets               - FSB - DEV: Recalculate onset timing
%   dev\fsb_filter_temporal_single      - FSB - DEV : temporally filter data from a single scan with Butterworth filter
%   dev\fsb_diag                        - FSB : Calculate and display diagnostic maps
%   dev\fsb_normalize_zscore            - FSB - DEV: Z-transform image data 
%   dev\fsb_normalize_baseline_add      - FSB - DEV :  Additive baseline normalization
%   dev\fsb_map_overlay                 - FSB - DEV : Overlay map on anatomical image
%   dev\fsb_export                      - FSB - MPI: Export data to monline format
%   dev\fsb_plot_voxel_timecourse       - FSB - DEV: Show voxel timecourse in detail
%   dev\fsb_realign                     - FSB: Realignment GUI
%   dev\fsb_normalize_baseline_divisive - FSB - DEV : Trial Baseline Normalization by division
%   dev\fsb_SPM                         - FSB: SPM interface GUI
%   dev\fsb_realign_spm2                - FSB - SPM:  realign multiple subjects/sessions in y-direction first and
%   dev\fsb_normalize_baseline_zscore   - FSB - DEV: Transform data into z-scores
%   dev\fsb_remove_disc                 - FSB - DEV: Remove discontinuities from a 4D-Dataset
%   dev\fsb_correct_intensity3          - FSB - DEV: lets you manually correct changes in intensity over an image in y direction
%   dev\fsb_import_spm                  - FSB - DEV: Import SPM experiment structure into sandbox struct
%   dev\fsb_remove_outliers             - FSB - DEV: remove outliers from image data
%   dev\fsb_functional_map              - FSB: Draw a functional map into separate figure
%   dev\fsb_error_handler               - FSB - DEV : Error handling
%   dev\fsb_conv_onsets                 - FSB - DEV: convolve time-jittered files for sandbox
%   dev\fsb_HRF_auto_adjust             - FSB - DEV: shift predictors in such a way that the correlation with
%   dev\fsb_normalize_scans             - FSB : Function to normalise 4D volumes by average volume intensity
%
%   subfun\fsb_interpolate_parallel_scans - FSB : Interpolate image data for artefact periods
%   subfun\fsb_img_write                  - FSB :  write files in analyze format to disk
%   subfun\fsb_calculate_corr             - FSB : Calculate reduced maps with reshaped data
%   subfun\fsb_calculate_std              - FSB: Calculate image std while ignoring parts where the image is zero
%   subfun\fsb_meancalc                   - FSB : Function to calculate the mean of a 4-D matrix in any dimension
%   subfun\fsb_crop_brain                 - FSB : remove empty space around a brain
%   subfun\fsb_realign_dft2D              - FSB : Realign scans with the discrete fourier transform algorithm
%   subfun\fsb_load_files                 - FSB : load files into sandbox
%   subfun\fsb_lens_brain                 - FSB : creates a lens shaped filter and applies it to a volume 
%   subfun\fsb_get_files_SPM              - FSB : function to get files in a SPM format
%   subfun\fsb_calculate_mean             - FSB: Calculate mean image over 4th dimension while ignoring parts where the image is zero
%   subfun\fsb_det_artifact_mod           - FSB : Function to detect and label defective volumes
%   subfun\fsb_normalize_ROI              - FSB : use the average ROI intensity to normalize the images
%   subfun\fsb_calculate_prob             - FSB: Calculate the probability value from a correlation coefficient and the number of values used
%   subfun\fsb_ctrm_3D_sandbox            - FSB : Calculate motion  with a Center of Mass Algorithm
%   subfun\fsb_pad_idat                   - FSB : take compacted idats and pad their borders
%   subfun\fsb_import_sandbox             - FSB :  Import sandbox variables into sandbox
%   subfun\fsb_realign_2D_ctm             - FSB : Realign each slice to mean slice with Center of Mass algorithm
%   subfun\fsb_threshold_cluster          - FSB : thresholds statistical maps with minimum cluster sizes
%   subfun\fsb_calc_cluster_tc            - FSB: Function to read in images and calculate cluster time course values
%   subfun\fsb_detrend_scan               - FSB : remove a linear drift from scanner signal
%   subfun\fsb_filter_temporal_scan       - FSB : Temporally filter image data scanwise
%   subfun\fsb_normalize_noise            - FSB : use the noise outside of the brain to normalize the images
%   subfun\fsb_detrend_nan                - FSB: remove linear trends from data that contains NaN values
%   subfun\fsb_get_hemodynamics_blocked   - FSB: Block design selection GUI
%   subfun\fsb_calculate_full_map         - FSB: calculate a statistical map for the whole volume
%   subfun\fsb_avg                        - FSB: calculates the average of a matrix over any dimension
%   subfun\fsb_denoise_idat               - FSB : remove noise from MRI images
%   subfun\fsb_normalize_baseline         - FSB :  Trial Baseline Normalization
%   subfun\fsb_noise_map                  - FSB : Plot noise timecourse maps
%   subfun\fsb_ssmooth_idat               - FSB : Spatial smoothing of 4D images
%   subfun\fsb_get_files_sandbox          - FSB : get files in cell format
%   subfun\fsb_enhance_contrast           - FSB : improve contrast between gray and white matter
%   subfun\fsb_interpolate_filter_scans   - FSB : interpolate out-of-trial periods in concatenated data and filter data
%   subfun\fsb_normalize                  - FSB : Normalize trials voxel by voxel to average brain intensity
%   subfun\fsb_get_hemodynamics           - FSB : create sandbox struct with different GUIs
%   subfun\fsb_get_extraction_mask        - FSB : Extract a brain, remove muscle and noise, reduce image size
%   subfun\fsb_resize_idat                - FSB : resize images 
%   subfun\fsb_colmap                     - FSB: Unified colormap routines
%   subfun\fsb_realign_3D_ctm             - FSB : 3D-CoM based realignment in phase direction
%   subfun\fsb_diag_euclid                - FSB : Display euclidian distances
%   subfun\fsb_preload_sandbox            - FSB : Load data into sandbox environment when starting up
%   subfun\fsb_corr2d                     - FSB: Calculate a correlation matrix from two matrices
%   subfun\fsb_ROI_mask                   - FSB : Calculate data for ROI area
%   subfun\fsb_calculate_red_map          - FSB : Calculate statistical map for displayed slices only
